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PATHOMATION UPDATE
PATHOMATION SOFTWARE

The collection is focused on Data Analysis, Image Annotation and Segmentation.īaSiC is a retrospective image correction method for optical microscopy, available as a Fiji/ImageJ Plugin.

Currently using Tensorflow 2xīAR ( Broadly Applicable Routines) is a GitHub-curated collection of scripts that simplifies the daily usage of ImageJ. Currently using Tensorflow 2xĮnables deep learning for BACMMAN (GPU). See Sources: and Wiki: Įnables deep learning for BACMMAN (CPU). Currently, Trainable Weka Segmentation and Elastic Alignment are accelerated in this way.Īn implementation of the AxoNet tool which can be used to count axons in light micrographs of optic nerves.īACteria in Mother Machine ANalyzer: a plugin for high-throughput analysis of multichannel mother machine data.

PATHOMATION SOFTWARE

The AngioTool software converted to a Fiji plugin.Ī set of plugins that allow Fiji to be run in parallel on a cluster. As seen in Wayne Rasband's opening talk at the 2015 conference!Ī suite of plugins providing enhanced 3D capabilities in ImageJ.ģDscript is a plugin animating 3D/4D microscopy data using a natural-language-based syntax.Īllen Brain BIOP Aligner, a plugin for aligning mouse brain slices to the Allen Brain CCFv3.ĪctogramJ is a plugin for analyzing actograms.Ī collection of plugins and macros for students of the Advanced Imaging Center (AIC) Fiji Course.Ī plugin to quantify angiogenic sprout morphology. See this page for details.Ī collection of plugins highlighting the latest features of ImageJ.

PATHOMATION UPDATE

Temporary base update site for ImageJ2 and Fiji components as everything migrates to Java 8. Restores old Fiji plugins which never made the transition to Maven, as well as obsolete libraries no longer used by current Fiji installations. If you downloaded Fiji directly, it is already included. No need to add this to your list of update sites it is already included.īase update site for Fiji and core Fiji plugins. Please maintain alphabetical order.Īvailable update sites ImageJ Update Sitesīase update site for ImageJ2.

Developers: You can add your own update site to this list by filing a pull request against this repository adding your site to the sites.yml index.

command and clicking the "Manage update sites" button.

Users: You can enable an update site using the Help ▶ Update.

The Updater has a convenient Manage update sites dialog that is populated by a central index. Terms of Service for personal update sites So, before enabling a new update site, it's safest to back up your installation. Unfortunately they are also one of the easiest ways to break an installation, by adding an update site that clashes with another update site, or even the ImageJ core. Update sites are a fantastic way to get new functionality in your ImageJ app.